PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01894.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 439aa    MW: 49673.6 Da    PI: 7.1346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01894.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12269314454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  mrna01894.1-v1.0-hybrid 269 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINNL 314
                              799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-2625179IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.40E-13263319No hitNo description
SuperFamilySSF474591.96E-17263328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.869265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-10269314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16269328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00302385435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEEINIISSC SPPYSICQET SANTLQQRLQ LIVQNRPELW VYSIFWQASK DRNGVLSLSW  60
AGGHSRGTRD FSSKKLDNYY QPKFGLELQT PKKGINRQVQ ALFQEDMDMD INGDVTDSEW  120
FYFYSLSLTQ SFAAGHGNNN IVGRTFCSGA FVWLAGDHEF QLYECERVKE ARMYGIQTLN  180
SKLIFGLDKI TTSCSVSNSN RGHVHVPQLQ NTMFPESDQK EWTTQGGRKE TVNNLSGSSS  240
DSGPSENTSS TRLRKRRKSD KGERDSPINH VEAERQRREK LNHRFYALRS VVPNVSKMDK  300
ASLLSDAVVY INNLKTKIEE LEAKIHAQPK KHKSSVMSDN TLDYSQMTNS LTYRAAAATE  360
VDVKIVGSEA MIRVRCPDDE DYPNARLMNA LKDLELHIHH ASISSVNDFM LQDVVARVPD  420
GFTSEEAMRT ALIQRFDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A5e-152317946199Transcription factor MYC3
4ywc_A5e-152317946199Transcription factor MYC3
4ywc_B5e-152317946199Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245834.11e-179PREDICTED: transcription factor bHLH14-like isoform X1
TrEMBLM5W9B51e-168M5W9B5_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11400.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-48bHLH family protein